The clues in the title
http://www.ew.com/article/2015/10/04/blindspot-episode-title-clues
The titles so far are anagrams that contain hints.
1x01 "Woe has Joined" = WHO IS JANE DOE
1x02 “A STRAY HOWL” = TAYLOR SHAW
1x03 “EIGHT SLIM GRINS” = THE MISSING GIRL
1x04 “BONE MAY ROT” = OR MAYBE NOT
1x05 "SPLIT THE LAW" = WILL THE PAST
1x06 "CEDE YOUR SOULS" = CLOUD OUR EYES
1x07 - "Sent On Tour" = TRUST NO ONE
1x08 - "Persecute Envoys" = SUSPECT EVERYONE
1x09 - "Authentic Flirt" = LIFT THE CURTAIN
1x10 - "Evil Handmade Instrument" = AND UNVEIL THE MASTERMIND
1x11 - Cease Forcing Enemy = IN CASE OF EMERGENCY
1x12 - Scientists Hollow Fortune = FOLLOW THESE INSTRUCTIONS
1x13 - Erase Weary Youth = STAY WHERE YOU ARE
1x14 - Rules in Defiance = FIND A SECURE LINE
1x15 - Older Cutthroat Canyon = TO CONTACT YOUR HANDLER
1x16 - Any Wounded Thief = FIND WHAT YOU NEED
1x17 - Man's Telepathic Loyal Lookouts = IN ALMOST THE LAST PLACE YOU LOOK
1x18 - One Begets Technique = TO BEGIN THE SEQUENCE
1x19 - In The Comet of Us = FOCUS ON THE TIME
1x20 - Swift Hardhearted Stone = THEN WAIT FOR THE ADDRESS
1x21 - Of Whose Uneasy Route = TO YOUR NEW SAFEHOUSE
1x22 - If love a rebel, death will render = THE FINAL ORDER WILL BE REVEALED
1x23 - Why Await Life’s End = WHEN IT'S FILED AWAY
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2x1 - In Night So Ransomed Rogue (2016) = NOTHING IS MORE DANGEROUS
2x2 - Heave Fiery Knot = THEY INVOKE FEAR
2x3 - Hero Fears Imminent Rot = FOR THEIR MOMENT IS NEAR
2x4 - If Beth = THE FBI
2x5 - Condone Untidiest Thefts = Defends the Constitution
2x6 - Her Spy's Harmed = Shepherd's Army
2x7 - Resolves Eleven Myths = Only Serve Themselves
2x8 - We Fight Deaths on Thick Lone Waters = When The Soldiers Attack, We Fight On
2x9 - Why Let Cooler Pasture Deform = We Shall Protect Your Freedom
Palindromes next!!! With a rebus puzzle.
2x10 - Nor I, Nigel, AKA Leg in Iron
2x11 - Droll Autumn, Unmutual Lord
2x12 - Devil NeveR Even Lived
2x13 - name noT one man
2x14 - borroW or rob
2x15 - draw o caesar Erase a coward
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1x01 thanks to knight3136
1x02, 1x02, 1x03 thanks to http://galacticdrift.tumblr.com/post/130121075995/with-the-shows-focus-on-puzzles-and-ciphers-the
1x05 and 1x06 thanks to jenderalcilik below
1x07, 1x08 and 1x09 thanks to haunting752 below.
1x11, 1x12, 1x13 thanks to ericdolson; 1x14, 1x15 thanks to https://www.reddit.com/r/blindspot/comments/483ikb/upcoming_episode_title_anagrams/
1x16 thanks to NikiSarah, 1x17, 1x21 thanks to http://amusementforme.tumblr.com/post/141051786643/blindspot-anagrams-1x16-1x23
1x18, 1x19, 1x22 thanks to https://www.reddit.com/r/blindspot/comments/3nsai8/possible_spoilers_anagrams_hidden_in_episode/
Thanks to NikiSarah for posting 1x11 - 1x16, 1x18-1x19 and LucasNon for 1x17, 1x22, 2x1, 2x2, 2x3, rycki1138, marcus_stokes2000 for different versions of 2x4.
LucasNon came up with alternatives for 1x14 and 1x15.
1x14 Rules in Defiance = Endurance Is Life
1x15 Older Cutthroat Canyon = Can't Control Your Death
2x6 thanks to Luvitbear and Puzzle1022!
https://www.reddit.com/r/blindspot/comments/526yp5/_/d8s8278
2x6, 2x7 thanks to puzzle1022 on Reddit
Thanks to LucasNon for keeping this thread alive!