Though I don't know if this is made clear in the film or not, Zoom is a time traveling villain: He comes from the 25th century. Presumably his coming back should have changed time and therefore him as well, but he's remained constant. His own past experience with time travel probably gave him the leg up in understanding what it was that Barry caused, and given their near identical power sets it's probably safe to assume that if Barry knew the world as it used to be then so did Zoom (perhaps the Speed Force grants some form of immunity to temporal booms.) It's speculation to be sure, and not made clear in the film itself, but I think there are enough threads that can be connected for it to all make sense.
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