The rational thing to do with the survivors
If I was the gov't I would've had 20 small cages outside, and opened the front door. Then... I would've surrounded the entrance with snipers, machine guns, the works... and told every single individual to get in ONE CAGE. And then once every one was in one cage, wait for them to transform... the ones that transform (due to being affected) kill them. The ones that don't, let them free.
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