Maybe the story is a kind of parable on the paradox of happiness? Let me explain.
Like pointed out in another message board, Charles Russel and Carl all three lack something and are obsessed trying to compensate for this privation. All of this is irrational and does not get to the root of the problem. Russel wants his last badge, trying to make his father love him, Charles wants his reputation back by capturing the bird, and Carl wants to get Ellie back by placing the house next to paradise falls. Because Russel is the youngest and the most flexible, he is the first who puts his obsession aside and stands up for Kevin. Of course Carl is so grumpy against him in the beginning because he does not want him to distract him from his last wish. He panders Russel for a while but is met with setback. Then he stubbornly chooses his house above Kevin, does not want to let go his admiration he once had for Muntz, and tries to move the increasingly heavy burden of his house.
But when he finally gets there, he begins to think about his stubbornness, realises how irrational he actually had been, and how even Ellie would not have wanted it. Then he decides to break with his past and the burden of his mourn by throwing out the furniture. Muntz does not make this realisation and does not break with his past, which drives him to lunacy. What he does not know is that the only way to catch the bird is that paradoxically, letting go of his obsession is the best way to obtain his objective, the way Russel did. What seemed impossible comes effortlessly, almost magically, when you would least expect it. I think this is the core message of the movie. This is not only true for Muntz: firstly Carl served as the father figure for Russel (and in fact Russel served as the child Carl never had, too) and secondly, Carl's house lands exactly where Ellie pictured it would on the moment he least expected it.
This is very similar to happiness, I think, which is something you will paradoxically be deprived of while you are desperately trying to obtain it, and comes when you least expect it.
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